SNP Profiles of EET 390 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CG	CT	CT	CC	CT	GG	TT	AA	AG	CC	AA	CT	TT
1._EET_390_[ECU]	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
2._EET_390_[ECU]	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
3._EET_390_[ECU]	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
4._EET_390_[ECU]	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
5._EET_390_[ECU]	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
6._GC-01-035-2-12	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
7._GC-01-035-2-12	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
8._GC-01-035-2-12	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
9._GC-01-035-2-12	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
10._GC-01-035-2-12	CC	CG	CC	CT	AC	CT	GG	TT	AA	AG	CC	AA	CT	TT
11._EET_390_[ECU]_Fld#_82_Plt#_6	GG	CG	GG	AG	AC	AG	CC	_	AA	AG	GG	AA	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	CT	CT	CG	GT	AG	TT	CG	GG	CT	AA	GG	CC	AG
1._EET_390_[ECU]	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
2._EET_390_[ECU]	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
3._EET_390_[ECU]	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
4._EET_390_[ECU]	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
5._EET_390_[ECU]	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
6._GC-01-035-2-12	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
7._GC-01-035-2-12	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
8._GC-01-035-2-12	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
9._GC-01-035-2-12	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
10._GC-01-035-2-12	CG	CT	CT	CG	GT	AA	TT	CG	GG	CT	AA	GG	CC	AG
11._EET_390_[ECU]_Fld#_82_Plt#_6	CG	AG	AG	CG	AC	_	AA	CG	CC	_	AA	_	GG	AG

	29	30	31	32	33
_Input profile	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._EET_390_[ECU]	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._EET_390_[ECU]	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EET_390_[ECU]	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._EET_390_[ECU]	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._EET_390_[ECU]	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-035-2-12	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-035-2-12	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-035-2-12	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-035-2-12	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-035-2-12	CC	GT	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._EET_390_[ECU]_Fld#_82_Plt#_6	CC	AC	CC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EET_390_[ECU]

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 37 46-48

Dapeng Zhang, 2016

1._EET_390_[ECU]

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1210a 6 > FP

Dapeng Zhang, 2016

2._EET_390_[ECU]

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1210a 4 > FP

Dapeng Zhang, 2016

3._EET_390_[ECU]

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1210a 1 > FP

Dapeng Zhang, 2016

4._EET_390_[ECU]

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1210a 8

Dapeng Zhang, 2016

5._EET_390_[ECU]

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1210a 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._EET_390_[ECU] GC-01-035-2-12

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._EET_390_[ECU] GC-01-035-2-12

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._EET_390_[ECU] GC-01-035-2-12

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

9._EET_390_[ECU] GC-01-035-2-12

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

10._EET_390_[ECU] GC-01-035-2-12

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._EET_390_[ECU] EET_390_[ECU]_Fld#_82_Plt#_6

50 %
29 shared markers

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USDA-TARS, United States of America

Location: Field: 82, Tree: 6

Notes: TARS_Cacao_collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1458	3	TcSNP1442	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1075	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP577	23	TcSNP560	24	TcSNP534	25	TcSNP529
26	TcSNP469	27	TcSNP242	28	TcSNP230	29	TcSNP193	30	TcSNP150
31	TcSNP144	32	TcSNP32	33	TcSNP25